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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs200263942 chr3:127946955 T/A 0.000119 192 14.35 2.97 11.13 KM Plot
LIHC rs200485711 chr21:44413761 TTTTTTTTG/T 6.15E-6 191 2.7 13.85 13.65 KM Plot
LIHC rs200488974 chr11:6931004 A/G 6.99E-7 188 13.67 12.87 1.13 KM Plot
LIHC rs2005618 chr3:129151667 A/G 2.93E-11 192 14.27 12.9 0.65 KM Plot
LIHC rs200665344 chr4:57200947 A/T 5.65E-7 190 13.73 13.78 0.2 KM Plot
LIHC rs200862814 chr2:86411228 AT/A 0.00029 190 13.58 1.72 10.98 KM Plot
LIHC rs201004149 chr3:112315505 T/TA 0.000431 191 13.58 11.98 3.43 KM Plot
LIHC rs2010916 chr22:30441219 G/A 2.51E-9 192 13.65 9.3 0.63 KM Plot
LIHC rs201104255 chr2:86347788 CAGG/C 6.15E-6 191 13.87 0.2 7.43 KM Plot
LIHC rs201228821 chr12:112278438 T/TA 9.87E-5 188 12.1 14.9 4.03 KM Plot
LIHC rs201642975 chr4:57198043 A/C 5.29E-7 190 13.83 13.78 0.2 KM Plot
LIHC rs201649092 chr4:57200613 T/C 5.65E-7 190 13.73 13.78 0.2 KM Plot
LIHC rs202049391 chr17:78349351 AAAG/A 9.59E-6 190 13.73 7.23 3.37 KM Plot
LIHC rs202190732 chr2:202156792 CAGGG/C 0 191 13.35 13.38 0.37 KM Plot
LIHC rs2046910 chr4:44653239 C/T 9.92E-6 192 16.07 13.53 3.03 KM Plot